Publications by Centre Staff - 2009

2. Cazzonelli, CI, Cuttriss, AJ, Cossetto, SB, Pye, W, Whelan, J, Finnegan, J, Turnbull, C and Pogson, BJ (2009) Epigenetic regulation of carotenoid composition in Arabidopsis Plant Cell (in press) PUBMED Impact Factor: 11
1. Förster B, Osmond CB, Pogson BJ (2009) De-novo Synthesis and Degradation of Lx- and V-cycle Pigments during Shade and Sun Acclimation in Avocado Leaves (P. americana) Plant Physiology (in press) PUBMED Impact Factor: 6

Publications by Centre Staff - 2008

50. Cousins AB, Pracharoenwattana I, Zhou W, Smith SM, Badger MR (2008) Peroxisomal malate dehydrogenase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release Plant Physiology 148(2):786-95 PUBMED Impact Factor: 6
49. Fallahi H, Scofield GN, Badger MR, Chow WS, Furbank RT, Ruan YL (2008) Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development Journal of Experimental Botany 59(12): 3283-3295 PUBMED Impact Factor: 3
48. Wilson P, Estavillo G, Field K, Pornsiriwong W, Carroll AJ, Howell K, Woo N, Nick, Lake J, Smith S, Millar AH, von Caemmerer S, Pogson B (Dec. 2008) The nucleotidase/phosphatase, SAL1, is a negative regulator of drought tolerance in Arabidopsis Plant Journal (in press) PUBMED Impact Factor: 7
47. Taylor NL, Millar AH (Dec. 2008) Long bugs to small plants — the role of Lon1 in protein stability and thermotolerance New Phytologist (in press) PUBMED Impact Factor: ?
46. Howell KA., Narsai R.,Carroll A., Ivanova A., Lohse M., Usadel B., Millar AH., Whelan J. (Dec. 2008) Mapping metabolic and transcript temporal switches during germination in Oryza sativa highlights specific transcription factors and the role of RNA instability in the germination process Plant Physiology (in press) PUBMED Impact Factor: 6
45. Carrie C., Giraud E. and Whelan J. (Dec. 2008) Protein transport in organelles: Dual Targeting of Proteins to Mitochondria and Chloroplasts FEBS Journal (in press) PUBMED Impact Factor: 3
44. Zhou W, Cheng Y, Yap A, Chateigner-Boutin AL, Delannoy E, Hammani K, Small I, Huang J (19 Nov 2008) The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth Plant Journal (in press) PUBMED Impact Factor: 7
43. Baer B, Heazlewood JL, Taylor NL, Eubel H, Millar AH (18 Nov 2008) The seminal fluid proteome of the honeybee Apis mellifera Proteomics (in press) PUBMED Impact Factor: 6
42. Giraud E, Ho LH, Clifton R, Carroll A, Estavillo G, Tan YF, Howell KA, Ivanova A, Pogson BJ, Millar AH, Whelan J 2008 The absence of Alternative Oxidase 1a in Arabidopsis thaliana results in acute sensitivity to combined light and drought stress Plant Physiology 147: 595-610 PUBMED Impact Factor: 6
41. Sappl P, Carroll AJ, Clifton R, Lister R, Whelan J, Millar AH, Singh K 14 Nov, 2008 The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress Plant Journal (in press) PUBMED Impact Factor: 7
40. Huang S, Taylor NL, Narsai R, Eubel H, Whelan J, Millar AH 12 Nov, 2008 Experimental analysis of the rice mitochondrial proteome, its biogenesis and heterogeneity Plant Physiology (in press) PUBMED Impact Factor: 6
39. Taylor NL, Tan YF, Jacoby RP, Millar AH 11 Nov, 2008 Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes Journal of Proteomics (in press) PUBMED Impact Factor: 6
38. Weckwerth W, Baginsky S, van Wijk K, Heazlewood JL, Millar A.H. 2008 The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology Journal of Proteome Research 7:4209-10 PUBMED Impact Factor: 7
37. Woo NS, Badger, MR and Pogson BJ Nov 2008 A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence Plant Methods 4(1):27 PUBMED Impact Factor: 2
36. Carrie C, Kühn K, Murcha M, Duncan O, Small I, O'Toole N, Whelan J 2008 Approaches to Defining Dual-Targeted Proteins in Arabidopsis Plant Journal (in press) PUBMED Impact Factor: 7
35. Kreuzwieser J, Hauberg J, Howell J, Carroll J, Rennenberg H, Millar AH, Whelan J 2008 Differential response of poplar (P. x canescens) leaves and roots underpin stress adaptation during hypoxia Plant Physiology (in press) PUBMED Impact Factor: 6
34. Schmitz-Linneweber C, Small I 2008 Pentatricopeptide repeat proteins: a socket set for organelle gene expression Trends in Plant Science (in press) PUBMED Impact Factor: 10
33. Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM, Millar AH. (October 17, 2008) Novel proteins, putative membrane transporters and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes. Plant Physiology In press. PUBMED Impact Factor: 6
32. Zhu Z, Tovchigrechko A, Baronova T, Gao Y, Douguet D, O'Toole N, Vakser IA. (2008) Large-scale structural modeling of protein complexes at low resolution. J Bioinform Comput Biol. 6(4):789-810. PUBMED Impact Factor: Unknown
31. Garmier M, Carroll AJ, Delannoy E, Vallet C, Day DA, Small ID, Millar AH (Nov, 2008) Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis Plant Physiology 148(3):1324-1341 PUBMED Impact Factor: 6
30. Tan KC, Solomon PS, Heazlewood JL, Millar AH, Oliver RP (Nov, 2008) A signaling-regulated short-chain dehydrogenase of Stagonospora nodorum regulates asexual development. Eukaryotic Cell 7(11):1916-1929 PUBMED Impact Factor: 4
29. Carrie C, Murcha MW, Kuehn K, Duncan O, Barthet M, Smith PM, Eubel H, Meyer E, Day DA, Millar AH, Whelan J (2008) Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana. FEBS Letters 582:3073-3079 PUBMED Impact Factor: 3
28. Pogson BJ, Woo NS, Förster B, Small ID (Nov, 2008) Plastid signalling to the nucleus and beyond. Trends in Plant Science 13 (11): 602-609 PUBMED Impact Factor: 10
27. Chateigner-Boutin AL, Ramos-Vega M, Guevara-García A, Andrés C, de la Luz Gutiérrez-Nava M, Cantero A, Delannoy E, Jiménez LF, Lurin C, Small I, León P (Jul 23, 2008) CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. Plant Journal (in press) PUBMED Impact Factor: 7
26. Ho LHM, Giraud E, Uggalla V, Lister R, Clifton R, Glen A, Thirkettle-Watts D, Van Aken O, Whelan J 2008 Identification of regulatory pathways controlling gene expression of stress responsive mitochondrial proteins in Arabidopsis Plant Physiology 147: 1858-1873 PUBMED Impact Factor: 6
25. Falcon de Longevialle AF, Hendrickson L, Taylor NL, Delannoy E, Lurin C, Badger M, Millar AH, Small I (Oct, 2008) The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana Plant Journal 56(1):157-68 PUBMED Impact Factor: 7
24. Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR (June, 2008) A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development. Developmental Cell 14(6):854-866 PUBMED Impact Factor: 15
23. Armstrong AF, Badger MR, Day DA, Barthet MM, Smith PMC, Millar AH, Whelan J, Atkin OK (May 6, 2008) Dynamic changes in the mitochondrial electron transport chain underpinning cold acclimation of leaf respiration. Plant Cell & Environment 31: 1156-1169 PUBMED Impact Factor: 4
22. O'Toole N, Hattori M, Andres C, Iida K, Lurin C, Schmitz-Linneweber C, Sugita M, Small I (June, 2008) On the expansion of the pentatricopeptide repeat gene family in plants. Molecular Biology and Evolution 25(6):1120-1128 PUBMED Impact Factor: 7
21. Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR (April 17, 2008) Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis Cell 133, 523-536 PUBMED Impact Factor: 29
20. Velten, J, Pogson BJ, and Cazzonelli, CI (Feb 28, 2008) Luciferase as a reporter of gene activity in plants. Transgenic Plant Journal 2 (1): 1-13 133, 523-536 PUBMED Impact Factor: Unknown
19. Huang S, Colmer TD, Millar AH (May, 2008) Does anoxia tolerance involve altering the energy currency towards PPi? Trends in Plant Science 13(5):221-227 PUBMED Impact Factor: 10
18. Lee C-P, Eubel H, O'Toole N, Millar AH (April 2, 2008) Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Molecular & Cellular Proteomics 7(7):1297-316 PUBMED Impact Factor: 10
17. Fulton DC, Stettler M, Mettler T, Vaughan CK, Li J, Franscisco P, Gil M, Reinhold H, Messerli G, Eicke S, Dorkin G, Halliday K, Smith AM, Smith SM, Zeeman SC. Apr 2008 BETA-AMYLASE 4, a non-catalytic protein that regulates leaf starch breakdown upstream of three active alpha-amylases in Arabidopsis chloroplasts. Plant Cell 20(4):1040-58 PUBMED Impact Factor 11.
16. Bechtold U, Richard O, Zamboni A, Gapper C, Geisler M, Pogson BJ, Karpinski S and Mullineaux PM (2008) Impact of chloroplast- and extracellular-srouced ROS on high light-responsive gene expression in Arabidopsis. Journal of Experimental Botany 59:121-133 133, 523-536 PUBMED Impact Factor: 3
15. Osmond CB, Forster B, Pogson BJ (2008) Dynamics of the truncated lutein epoxide cycle in avocado (Persea Americana L.); implications for efficiency of light harvesting In: Allen JF, Grantt E. Golbeck, JH Osmond CB (eds) Photosynthesis. Energy from the Sun, Springer, Dordrecht (2008) Vol 2: 1031-1034. ISBN 978-1-4020-6707-5 URL
14. Takahashi S, Whitney S, Itoh S, Maruyama T, Badger M (2008) Heat stress causes inhibition of the de novo synthesis of antenna proteins and photobleaching in cultured Symbiodinium. Proceedings of the National Academy of Sciences U S A 105, 4203-4208. PUBMED Impact Factor 10
13. Baroli I, Price GD, Badger MR, von Caemmerer S. Feb (2008) The contribution of photosynthesis to the red light response of stomatal conductance. Plant Physiology 146, 737-747. PUBMED Impact Factor 6
12. Hendrickson L, Sharwood R, Ludwig M, Whitney SM, Badger MR, von Caemmerer S (28 March, 2008) The effects of Rubisco activase on C4 photosynthesis and metabolism at high temperature. Journal of Experimental Botany 59(7):1789-1798 PUBMED Impact Factor 3
11. Badger MR, Bek EJ (2008). Multiple Rubisco forms in Proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle. Journal of Experimental Botany 59(7):1525-1541. PUBMED Impact Factor: 3
10. Cousins AB, Badger MR, von Caemmerer S (2008). C4 photosynthetic isotope exchange in NAD-ME and NADP-ME type grasses. Journal of Experimental Botany. 59(7):1695-1703. PUBMEDImpact Factor: 3
9. Carroll AJ, Heazlewood JL, Ito J, Millar AH (2008) Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Molecular & Cellular Proteomics 7, 347-369 PUBMED Impact Factor: 10
8. Meyer EH, Taylor NL, Millar AH (2008) Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis. Journal of Proteome Research 7, 786-94 PUBMED Impact Factor: 7
7. Losciale P, Oguchi R, Hendrickson L, Hope AB, Corelli-Grappadelli L, Chow WS Jan (2008). A rapid, whole tissue determination of the functional fraction of photosystem II after photoinhibition of leaves based on flash-induced P700 redox kinetics. Physiologia Plantarum 132, 23-32. PUBMED Impact Factor: 2
6. O'Toole N, Vakser I (2008). Large-scale characteristics of the energy landscape in protein-protein interactions. Proteins-Structure Function and Bioinformatics 71, 144-52 PUBMED Impact Factor: 4
5. Heazlewood JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, and Schulze WX (2008). PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research. 36, D1015-1021  PUBMED Impact Factor: 8
4. Meyer EH, Millar AH (2008) Isolation of mitochondria from plant cell culture. In: 2D PAGE: Sample preparation and fractionation, Methods in Molecular Biology, Humana Press, USA. ISBN 978-1-60327-209-4 URL Vol 425, pp 161-169
3. Jellicoe MM, Nichols SJ, Callus BA, Baker MV, Barnard, Berners-Price SJ, Whelan J, Yeoh GC, Filipovska A. (Apr 15, 2008) Bioenergetic differences selectively sensitize tumorigenic liver progenitor cells to a new gold(I) compound. Carcinogenesis. 29: 1124-1133 PUBMED Impact Factor: 5
2. Black S, Stanley W.A., Filipp F.V., Bhairo M., Verma A., Wichmann O., Sattler M., Wilmanns M. and Schultz C. (2008) Probing lipid and drug binding domains with fluorescent dyes. Bioorganic and Medicinal Chemistry 16, 1162-73. PUBMED Impact Factor: 3
1. Price GD, Badger MR, Woodger FJ, Long BM (2008). Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants. Journal of Experimental Botany 59(7):1441-61 PUBMED Impact Factor: 3

2008 Statistics (to date)

  • 44 publications
  • at least 31 in ISI listed Journals
  • No. Impact >5 <10 = 22
  • No. Impact Factor >=10 = 9
  • Average Impact Factor = 6.4 (240/37)

Publications by Centre Staff - 2007

Glaring MA, Zygadlo A, Thorneycroft D, Schulz A, Smith SM, Blennow A, Baunsgaard L. (2007) An extra-plastidial alpha-glucan, water dikinase from Arabidopsis phosphorylates amylopectin in vitro and is not necessary for transient starch degradation. Journal of Experimental Botany 58, 3949-60. PUBMED Impact Factor 3
Rossel JB, Wilson PB, Hussain D, Woo NS, Gordon MJ, Mewett OP, Howell KA, Whelan J, Kazan K, Pogson BJ (2007) Systemic and Intracellular Response to Photooxidative stress in Arabidopsis. Plant Cell 19, 4091-4110 PUBMED Impact Factor: 11
Griffiths H, Cousins AB, Badger MR, von Caemmerer S (2007) Discrimination in the Dark. Resolving the Interplay between Metabolic and Physical Constraints to PEPC Activity during the CAM Cycle. Plant Physiology 143, 1055-67 PUBMED Impact Factor: 6
McConnell IL, Badger MR, Wydrzynski T, Hillier W (2007) A Quantitative Assessment of the Carbonic Anhydrase Activity in Photosystem II. Biochemica et Biophysica Acta Biomembranes. 1767, 639-647. PUBMED Impact Factor: 4
Takahashi S, Bauwe H, Badger M (2007) Impairment of the photorespiratory pathway accelerates photoinhibition of photosystem II by suppression of repair and not acceleration of damage processes in Arabidopsis thaliana. Plant Physiology 144, 487-494. PUBMED Impact Factor: 6
Mueller-Cajar O, Badger MR (2007). New roads lead to Rubisco in Archaebacteria. Bioessays 29, 722-724 PUBMED Impact Factor: 6
Long BM, Badger MR, Whitney SM, Price GD (2007). Analysis of carboxysomes from Synechococcus PCC7942 reveals multiple Rubisco complexes with carboxysomal proteins CcmM & CcaA. Journal of Biological Chemistry 282, 29323-35. PUBMED Impact Factor: 6
Cousins AB, Baroli I, Badger MR, Ivakov A., Lea PJ, Leegoog RC, von Caemmerer S. (2007). The role of phosphoenolpyruvate carboxylase (PEPC) during C4 photosynthetic isotope exchange and stomatal conductance. Plant Physiology. 145, 1006-1017. PUBMED Impact Factor: 6
Mc Nevin DB, Badger MR, Whitney S, von Caemmerer S, Tcherkez G, Farquhar GD. (2007). Differences in carbon isotope discrimination of three variant Rubiscos reflect differences in their catalytic mechanism. Journal of Biological Chemistry 282, 36068-36076 . PUBMED Impact Factor: 6
Edner C, Li J, Albrecht T, Mahlow S, Hejazi M, Hussain H, Kaplan F, Guy C, Smith SM, Steup M, Ritte G (2007) Glucan, Water Dikinase Activity Stimulates Breakdown of Starch Granules by Plastidial β-Amylases. Plant Physiology 145, 17-28 PUBMED Impact Factor: 6
Narsai R, Howell KA, Millar AH, O'Toole N, Small I, Whelan J (2007) Genome-Wide Analysis of mRNA Decay Rates and their Determinants in Arabidopsis thaliana. The Plant Cell 19, 3418-3436 PUBMED Impact Factor: 11
Winger, AM, Taylor NL, Heazlewood JL, Day DA, Millar AH (2007) The cytotoxic lipid peroxidation product 4-hydroxy-2-nonenal covalently modifies a selective range of proteins linked to respiratory function in plant mitochondria. The Journal of Biological Chemistry 282, 37436-37447 PUBMED Impact Factor: 6
Stanley WA (2007) Advances in Structural Biology and Structure Prediction. Current Science 93, 755-757. Article Impact Factor: 1
Stanley WA, Fodor K, Marti-Renom MA, Schliebs W, Wilmanns M (2007) Protein import into peroxisomes by ring-shaped import receptors. FEBS Letters 581, 4795-4802 PUBMED Impact Factor: 3
Delannoy E, Stanley WA, Bond CS, Small ID (2007) Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles. Biochemical Society Transactions 35, 1643-1647. PUBMED Impact Factor: 3
Kursula P, Kursula I, Massimi M, Song Y-H, Downer J , Stanley WA, Witke W, Wilmanns M. (2007) High-resolution structural analysis of mammalian profilin IIa complex formation with two physiological ligands: the formin homology 1 domain of mDia1 and the proline-rich domain of VASP. Journal of Molecular Biology 375, 270-90. PUBMED Impact Factor: 5
Falcon de Longevialle A, Meyer EH, Andrés C, Taylor NL, Lurin C, Millar AH, Small ID (2007). The Pentatricopeptide Repeat Gene OTP43 is Required for trans-Splicing of the Mitochondrial nad1 Intron 1 in Arabidopsis thaliana. The Plant Cell 19, 3256-3265 PUBMED Impact Factor: 11
Lister R, Carrie C, Duncan O, Ho LHM, Howell KA, Murcha MW and Whelan J (2007) Functional Definition of Outer Membrane Proteins Involved in Preprotein Import into Mitochondria. The Plant Cell 19, 3739-3759 PUBMED Impact Factor: 11
Thatcher LF, Carrie C, Andersson CR, Sivasithamparam K, Whelan J, Singh KB (2007). Differential gene expression and subcellular targeting of Arabidopsis glutathione S-transferase F8 is achieved through alternative transcription start sites. Journal of Biological Chemistry 282, 28915-28928 PUBMED Impact Factor: 6
Olejnik K, Murcha MW, Whelan J, Kraszewska E (2007). Cloning and characterisation of AtNUDT13, a novel mitochondrial Arabidopsis thaliana Nudix hydrolase specific for long-chain diadenosine polyphosphates. FEBS Journal 274, 4877-4855. PUBMED Impact Factor: 3
Howell KA, Millar AH, Whelan, J.(2007). Building the Powerhouse. What are the signals involved in plant mitochondrial biogenesis. Plant Signalling and Behaviour 2, 427-429. ABSTRACT
Saloné V, Rãdinger M, Polsakiewicz M, Hoffmann B, Groth-Malonek M, Szurek B, Small I, Knoop V and Lurin C (2007). A hypothesis on the identification of the editing enzyme in plant organelles. FEBS Letters 581, 4132-8 PUBMED Impact Factor: 3
Chateigner-Boutin A-L and Small I (2007). A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons. Nucleic Acids Research 35, e114 PUBMED Impact Factor: 8
Geisler-Lee J, O'Toole N, Ammar R, Provart NJ , Millar AH, Geisler M (2007) A Predicted Interactome for Arabidopsis. Plant Physiology 145, 317-29 PUBMED Impact Factor: 6
Winger AM, Taylor NL, Heazlewood JL, Day DA, Millar AH (2007) Identification of intra- and inter-molecular disulfide bonding in the plant mitochondrial proteome by diagonal gel electrophoresis. Proteomics 7, 4158-70. PUBMED Impact Factor: 6
Eubel H, Lee CP, Kuo J, Meyer EH, Taylor NL, Millar AH (2007) Free Flow Electrophoresis for Purification of Plant Mitochondria by Surface Charge. The Plant Journal 52, 583-594 PUBMED Impact Factor: 7
Legen J., Wanner G., Herrmann R.G., Small I., and Schmitz-Linneweber C. (2007). Plastid tRNA Genes trnC-GCA and trnN-GUU are essential for plant cell development. The Plant Journal 51, 751-62 PUBMED Impact Factor: 7
Maliga P., and Small I. (2007). Plant biotechnology 2007: all three genomes make contributions to progress. Current Opinion in Biotechnology, 18, 97-99. DOI Abstract Impact Factor: 7
Pusnik M., Small I., Read L.K., Fabbro T., and Schneider A. (2007). Pentatricopeptide repeat proteins in T. brucei function in mitochondrial ribosomes. Molecular and Cellular Biology 27, 6876-88 PUBMED Impact Factor: 7
Small I. (2007). RNAi for revealing and engineering plant gene functions.  Current Opinion in Biotechnology 18, 148-153. PUBMED Impact Factor: 7.
Glaser E. and Whelan J. (2007). Import of nuclear-encoded mitochondrial proteins. In: Plant Mitochondria, Logan, D.C. (ed.). Annual Plant Reviews 31, Chapter 4, pp 97-128, Blackwell Publishing Ltd, Oxford. URL
Cuttriss AJ, Chubb AC, Alawady A, Grimm B, and Pogson BJ (2007) Regulation of lutein biosynthesis and prolamellar body formation in Arabidopsis. Functional Plant Biology , 34, 663-672. Abstract Impact Factor: 2
Howell KA, Cheng K, Murcha MW, Jenkin LE, Millar AH, Whelan J. (2007) Oxygen initiation of respiration and mitochondrial biogenesis in rice. Journal of Biological Chemistry 282, 15619-15631 PUBMED Impact Factor: 6
Ho LH, Giraud E, Lister R, Thirkettle-Watts D, Low J, Clifton R, Howell KA, Carrie C, Donald T, Whelan J. (2007) Characterisation of the Regulatory and Expression Context of an Alternative Oxidase Gene Provides Insights into Cyanide Insensitive Respiration during Growth and Development.Plant Physiology 143, 1519-33 PUBMED Impact Factor: 6
Pracharoenwattana I, Cornah JE, Smith SM (2007) Arabidopsis peroxisomal malate dehydrogenase functions in beta-oxidation but not the glyoxylate cycle. The Plant Journal 50, 381-390 PUBMED Impact Factor: 7
McNevin DB, Badger MR, Kane HJ, Farquhar GD (2007) Measurement of (carbon) kinetic isotope effect by Rayleigh fractionation using membrane inlet mass spectrometry for CO2 consuming reactions. Functional Plant Biology 33, 1115-1128 PUBMED Impact Factor: 2
Fan D-Y, Nie Q, Hope AB, Hillier W, Pogson BJ, Chow WS (2007) Quantification of cyclic electron flow around Photosystem I in spinach leaves during photosynthetic induction. Photosynthesis Research 94, 347-357 PUBMED Impact Factor: 2
Meyer EH, Heazlewood JL, Millar AH (2007) Mitochondrial acyl carrier proteins in Arabidopsis thaliana are predominantly soluble matrix proteins and none can be confirmed as subunits of respiratory Complex I. Plant Molecular Biology 64, 319-327 PUBMED Impact Factor: 3
Heazlewood JL, Millar AH (2007) Arabidopsis Mitochondrial Proteomics. In: Mitochondria Practical Protocols, Chapter 38 Methods in Molecular Biology Vol 372. Humana Press, pp 559-571. ISBN 978-1-59745-365-3 Abstract
Taylor NL, Millar AH (2007) Oxidative Stress and Plant Mitochondria. In: Mitochondria Practical Protocols, Chapter 28, Methods in Molecular Biology Vol 372. Humana Press, pp 389-403. ISBN 978-1-59745-365-3 Abstract
Murcha MW, Elhafez D, Lister R, Tonti-Filippini J, Baumgartner M, Philippar K, Carrie C, Mokranjac D, Soll J, Whelan J (2007) Characterisation of the preprotein and amino acid transporter family in Arabidopsis. Plant Physiology 143, 199-212 PUBMED Impact Factor: 6
Carrie C, Murcha MW, Millar AH, Smith SM, Whelan J (2007) Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Molecular Biology 63:97-108. PUBMED Impact Factor: 3
Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I, Millar AH (2007) SUBA: The Arabidopsis Subcellular Database. Nucleic Acids Research 35, D213-8. PUBMED Impact Factor: 8
Clifton R, Whelan J (2007) Plant Mitochondrial Transcriptomics by Quantitative Real-Time PCR. In: Mitochondria Practical Protocols, Chapter 36, Methods in Molecular Biology Vol 372, Humana Press pp529-542. ISBN 978-1-59745-365-3 Abstract
Millar AH, Liddell A, Leaver CJ (2007) Isolation and Sub-Fractionation of Mitochondria from Plants In: Methods in Cell Biology on Mitochondria, Pon LA and Schon EA (Eds.) Academic Press, Inc. Vol 80, pp 66-87. ISBN 973-0-12-544173-5 URL
Zeeman SC, Smith SM and Smith AM (2007) The diurnal metabolism of leaf starch. Biochemical Journal 401:13-28. PUBMED Impact Factor: 4
Ito J, Heazlewood JL, Millar AH (2007) The plant mitochondrial proteome and the challenge of defining the post-translational modifications responsible for signaling and stress effects on respiratory functions. Physiologia Plantarum 129, 207-224. Abstract Impact Factor: 2
Andres C, Lurin C, Small ID (2007) The multifarious roles of PPR proteins in plant mitochondrial gene expression. Physiologia Plantarum 129, 14-22. Abstract Impact Factor: 2

2007 Statistics

  • 48 publications
  • 42 in ISI listed Journals
  • No. Impact >= 5 & < 10 = 23
  • No. Impact >= 10 = 4
  • Average Impact Factor = 5.5 (231/42)

Publications by Centre Staff - 2006

Cousins AB, Badger MR, von Caemmerer S (2006) A transgenic approach to understanding the influence of carbonic anhydrase on C18OO discrimination during C4 photosynthesis. Plant Physiology 142, 662-72 PUBMED Impact Factor: 6
Heazlewood JL, Millar AH (2006) Plant Proteomics: Challenges and Resources In: Plant Proteomics, Annual Plant Reviews, Christine Finnie (Ed.) Blackwell Publishing, UK. ISBN: 9781405144292 URL
Eubel H, Heazlewood JL, Millar AH (2006) Isolation and sub-fractionation of plant mitochondria for proteomic analysis. In: Plant Proteomics: Methods and Protocols Vol 355, Humana Press, USA.pp 49-62 ISBN 978-1-58829-635-1 PUBMED
Millar AH, Whelan J, Small I (2006) Recent surprises in protein targeting to mitochondria and plastids. Current Opinion in Plant Biology 9, 610-615 PUBMED Impact Factor: 11
Ito J, Heazlewood JL, Millar AH (2006) Analysis of the soluble ATP-binding proteome of plant mitochondria identifies new proteins and nucleotide triphosphate interactions within the matrix. Journal of Proteome Research 5, 3459-69. PUBMED Impact Factor: 7
Hillier W., McConnell I., Badger M.R., Boussac A., Klimov V., Dismukes G.C. and Wydrzynski T. (2006) Quantitative assessment of instrisic carbonic anhydrase activity and the capacity for bicarbonate oxidation in photosystem II. Biochemistry 45, 2094-2102 PUBMED Impact Factor: 4
Cousins A.B, Badger M.R. and von Caemmerer S. (2006) Carbonic anhydrase and its influence on carbon isotope discrimination dur C4 photosynthesis: Insights from antisense RNA in Flaveria bidentis. Plant Physiology 141, 232-42 PUBMED Impact Factor: 6
Foley RC, Sappl PG, Perl-Treves R, Millar AH and Singh KB (2006) Desenitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner. Plant Physiology 142, 245-53 PUBMED Impact Factor: 6
Alexeyenko A, Millar AH, Whelan J, Sonnhammer ELL (2006) Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis.Trends in Genetics 22, 589-593 PUBMED Impact Factor: 12
Kunze M, Pracharoenwattana I, Smith SM, Hartig A. (2006) A central role for the peroxisomal membrane in glyoxylate cycle function. Biochimica et Biophysica Acta - Molecular Cell Research 1763, 1441-52 PUBMED Impact Factor: 5
Sundaramoorthy R, Micossi E, Alphey MS, Germain V, Bryce JH, Smith SM, Leonard GA, Hunter WN. (2006) The Crystal Structure of a Plant 3-Ketoacyl-CoA Thiolase Reveals the Potential for Redox Control of Peroxisomal Fatty Acid beta-Oxidation. Journal of Molecular Biology 359, 347-57. PUBMED Impact Factor: 5
Sun ZL, Lee HY, Matsubara S, Hope AB, Pogson BJ, Hong YN and Chow WS (2006) Photoprotection of residual functional Photosystem II units that survive illumination in the absence of repair, and their critical role in subsequent recovery Physiologia Plantarum 128, 415-424. Abstract Impact Factor: 2
Forster B, Mathesius U, Pogson BJ (2006) Comparative proteomics of high light stress in the model alga Chlamydomonas reinhardtii.Proteomics 6, 4309-20 PUBMED Impact Factor: 6
DellaPenna D and Pogson BJ (2006) Vitamin synthesis in plants: tocopherols and carotenoids. Annual Review of Plant Biology 57, 711-738. PUBMED Impact Factor: 18
Howitt CA and Pogson BJ (2006) Carotenoid accumulation and function in seeds and non-green tissues. Plant, Cell and Environment 29, 435-445. PUBMED Impact Factor: 4
Rossel JB, Walter PB, Hendrickson L, Chow W, Poole A, Mullineaux P, Pogson BJ (2006) A mutation affecting ascorbate peroxidase 2 gene expression reveals a link between responses to high light and drought tolerance. Plant, Cell and Environment 29, 269-281. PUBMED Impact Factor: 4
Cuttriss AJ, Mimica J, Howitt C, Pogson BJ (2006) Carotenoid Metabolism. The Structure and Fuction of Plastids, Advances in Photosynthesis and Respiration Series Springer Vol 23, pp315-334 Hoober, K and Wise, R. (eds) ISBN: 978-1-4020-4060-3 URL.
Howell KA, Millar AH, Whelan J (2006) Ordered assembly of mitochondria during rice germination begins with promitochondrial structures rich in components of the protein import apparatus. Plant Molecular Biology 60, 201-23 PUBMED Impact Factor: 3
Elhafez D, Murcha MW, Clifton R, Soole KL, Day DA, Whelan J (2006) Characterisation of Mitochondrial Alternative NAD(P)H Dehydrogenases in Arabidopsis: Intraorganelle Location and Expression. Plant & Cell Physiology 47:43-54. PUBMED Impact Factor: 3
Clifton R, Millar AH, Whelan J (2006) Alternative Oxidases in Arabidopsis: a comparative analysis of differential expression in the gene family provides new insights into function of non-phosphorylating bypasses. Biochimica et Biophysica Acta - Bioenergetics 1757:730-41 PUBMED Impact Factor: 4
Lister R and Whelan J (2006) Mitochondrial protein import: convergent solutions for receptor structure. Current Biology 16, R197-9. PUBMED Impact Factor: 12
Holt KE, Millar AH and Whelan J (2006) ModuleFinder and CoReg: linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants. Plant Methods 2, 8 PUBMED
Niittyl T, Comparot-Moss S, Lue W-L, Messerli G, Trevisan M, Seymour MDJ, Gatehouse JA, Villadsen D, Smith SM, Chen J, Zeeman SC, and Smith AM (2006) Similar protein phosphatases control starch metabolism in plants and glycogen metabolism in mammals. Journal of Biological Chemistry 281, 11815-8. PUBMED Impact Factor: 6
Delatte T, Umhang M, Trevisan M, Eicke S, Thorneycroft D, Smith SM, and Zeeman SC (2006) Evidence for distinct mechanisms of starch granule breakdown in plants. Journal of Biological Chemistry 281, 12050-9. PUBMED Impact Factor: 6
Baker A, Graham IA, Holdsworth M, Smith SM and Theodoulou FL (2006) Chewing the fat: beta-oxidation in signalling and development. Trends in Plant Science 11, 124-32. PUBMED Impact Factor: 10
Badger MR, Price GD, Long BM, Woodger FJ (2006) The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism. Journal of Experimental Botany 57, 249-65 PUBMED Impact Factor: 3
Woodger FJ, Badger MR, Price GD (2006) Sensing of Inorganic Carbon Limitation in Synechococcus PCC7942 Is Correlated with the Size of the Internal Inorganic Carbon Pool and Involves Oxygen. Plant Physiology 139, 1959-69 PUBMED Impact Factor: 6

2006 Statistics

  • 27 publications
  • 23 in ISI listed Journals
  • No. Impact >5 <10 = 10
  • No. Impact Factor >10 = 5
  • Average Impact Factor = 6.5 (149/23)

Publications by Centre Staff - 2005

Murcha MW, Millar AH, Whelan J (2005) The N-terminal cleavable extension of plant carrier proteins in responsible for efficient insertion into the inner mitochondrial membrane. Journal of Molecular Biology 351, 16-25 PUBMED Impact Factor: 5
Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiology 139, 598-609 PUBMED Impact Factor: 6
Eubel H, Braun HP, Millar AH (2005) Blue-Native PAGE in Plants: a Tool in Analysis of Protein-Protein Interactions. Plant Methods 1, 11 PUBMED
Murcha MW, Rudhe C, Elhafez D, Adams KL, Daley DO, Whelan J (2005) Adaptations required for mitochondrial import following mitochondrial to nucleus gene transfer of ribosomal protein S10. Plant Physiology 138, 2134-44 PUBMED Impact Factor: 6
Forster B, Osmond CB, Pogson BJ (2005) Improved survival of very high light and oxidative stress is conferred by spontaneous gain-of-function mutations in Chlamydomonas. Biochimica Biophysica Acta 1709:45-57 PUBMED Impact Factor: 4
Duchene AM, Giritch A, Hoffmann B, Cognat V, Lancelin D, Peeters NM, Zaepfel M, Marechal-Drouard L, Small ID (2005) Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana. Proceedings of the National Academy of Sciences U S A. 102:16484-16489. PUBMED Impact Factor: 10
Aubourg S, Brunaud V, Bruyere C, Cock M, Cooke R, Cottet A, Couloux A, Dehais P, Deleage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlne G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Riviere S, Rombauts S, Rouze P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A. (2005) GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Research 33, D641-6. PUBMED Impact Factor: 8
Lister, R., Hulett, J.M., Lithgow, T. and Whelan, J. (2005). Protein import into mitochondria: endosymbiotic origins and functions today. Molecular Membrane Biology 22, 87-100. PUBMED Impact Factor: 4
Murcha M.W., Elhafez D., Millar A.H. and Whelan J. (2005). The C-terminal region of TIM 17 links the outer and inner mitochondrial membranes in Arabidopsis and is essential for protein import. Journal of Biological Chemistry 280, 16476-16483. PUBMED Impact Factor: 6
Clifton R., Lister R., Parker K.L., Sappl P.G., Elhafez D., Millar A.H., Day D.A. and Whelan J. (2005). Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana. Plant Molecular Biology 58, 193-212. PUBMED Impact Factor: 3
Daley DO, Whelan J (2005) Why genes persist in organelle genomes. Genome Biology 6, 110-115. PUBMED Impact Factor: 10
Long BM, Price GD, Badger MR (2005) Proteomic assessment of an established yechnique for carboxysome enrichment from Synechococcus PCC7942. Canadian Journal of Botany 83, 746-757. Impact Factor: 1
Woodger FJ, Badger MR, Price GD (2005) Regulation of cyanobacterial CO2-concentrating mechanisms through transcriptional induction of high-affinity-Ci transport systems. Canadian Journal of Botany 83, 698-710. Impact Factor: 1
Heazlewood JL and Millar AH (2005) AMPDB: The Arabidopsis Mitochondrial Protein Database. Nucleic Acids Research 33, D605-D610. PUBMED Impact Factor: 8
Noguchi K, Taylor NL Millar AH, Lambers H, Day DA (2005) Response of mitochondria to light intensity in the leaves of sun and shade species. Plant Cell and Environment 28, 760-771. Impact Factor: 4
Winger AM, Millar AH, Day DA (2005) Sensitivity of plant mitochondrial terminal oxidases to the lipid peroxidation product 4-hydroxy-2-nonenal (HNE). Biochemical Journal 387, 865-870. PUBMED Impact Factor: 4
Huang S, Greenway H, Colmer TD, Millar AH (2005). Identification of proteins synthesised in rice coleoptiles during prolonged anoxia. Annals of Botany 96:703-15. PUBMED Impact Factor: 2
Taylor NL, Heazlewood JL, Day DA, Millar AH (2005) Differential Impact of environmental stresses on the pea mitochondrial proteome. Molecular & Cellular Proteomics 4:1122-1133 PUBMED Impact Factor: 10
Millar AH, Heazlewood JL, Kristensen B, Bruan HP, Moller IM (2005) The Plant Mitochondrial Proteome. Trends in Plant Science 10:36-43. PUBMED Impact Factor: 10
Pogson, B.J., Rissler, H.M. Frank, H.A. (2005) The roles of carotenoids in photosystem II of higher plants In: Photosystem II: The Light-Driven Water/Plastoquinone Oxido-reductase in Photosynthesis. Advances in Photosynthesis and Respiration Series, Springer Wydrzynski T. and Satoh (eds) ISBN: 978-1-4020-4249-2 URL.
Hendrickson, L., Förster, B., Pogson, B.J. and Chow, W.S. (2005) A simple chlorophyll fluorescence parameter that correlates with the rate coefficient of photoinactivation of Photosystem II. Photosynthesis Research 84, 43-9 PUBMED Impact Factor: 2
De Coninck B, Le Roy K, Francis I, Clerens S, Vergauwen R, Halliday A, Smith SM, Van Laere A and Van den Ende W (2005) AtcwINV3 and 6 are not invertases but are fructan exohydrolases with different substrate specificities. Plant Cell and Environment 28, 432-443. Impact Factor: 4
Smith AM, Zeeman SC, Smith SM (2005) Starch degradation. Annual Review of Plant Biology 56, 73-98. PUBMED Impact Factor: 18
Tien-Shin Yu, Samuel C Zeeman, David Thorneycroft, Daniel C Fulton, Wei-Ling Lue, Björn Hegemann, Shu-Yun Tung, Takayuki Umemoto, Andrew Chapple, Der-Long Tsai, Hannah Dunstan, Shue-Mei Wang, Alison M Smith, Jychian Chen and Steven M Smith. (2005) Chloroplast alpha-amylase is not required for breakdown of transitory starch in Arabidopsis leaves. Journal of Biological Chemistry, 280, 9773-9779. PUBMED Impact Factor: 6
Pracharoenwattana I, Cornah JE and Smith SM (2005) Peroxisomal citrate synthase catalyses an essential step in the respiration of fatty acids during germination of Arabidopsis seeds and is required to break dormancy. Plant Cell, 17, 2037-2048. PUBMED Impact Factor: 11

2005 Statistics

  • 25 publications
  • 23 in ISI listed Journals
  • No. Impact >5 <10 = 7
  • No. Impact Factor >10 = 6
  • Average Impact Factor = 6.2 (143/23)

Centre Publications

Chief Investigators

Personal Publications

  • Ian Small
  • Murray Badger
  • David Day
  • Harvey Millar
  • Barry Pogson
  • Steve Smith
  • Jim Whelan

    • More...



    last modified: Fri Dec 19 12:07:19 2008